PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000116.1_g000059.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25720.4 Da    PI: 9.9388
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000116.1_g000059.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-29959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien + rqv fskRrng+lKKA+ELSvLCdaevavi+fs++++lye+ss
  Rmu_ssc0000116.1_g000059.1  9 KRIENATSRQVAFSKRRNGLLKKAFELSVLCDAEVAVIVFSQKNRLYEFSS 59
                                79***********************************************96 PP
2K-box744.3e-2579171698
                       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                 ++   e+ +++l++e+a + k+ie+L+ +qR+llG dL+++s +e +q+ +qLe+sl+k+R++K++ll+eqie+l+ ke+ l 
  Rmu_ssc0000116.1_g000059.1  79 NTTEVEQYMQQLKHESADMAKKIETLEASQRRLLGHDLDPCSAQEVNQMSSQLERSLRKVRERKDQLLTEQIERLKAKERFLL 161
                                 445678889************************************************************************** PP

                       K-box  89 eenkaLrkkl 98 
                                 een +L+++ 
  Rmu_ssc0000116.1_g000059.1 162 EENAKLHTQC 171
                                 ******9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKIEVKR IENATSRQVA FSKRRNGLLK KAFELSVLCD AEVAVIVFSQ KNRLYEFSSS  60
DMQKTIKKYQ KHAKGALTNT TEVEQYMQQL KHESADMAKK IETLEASQRR LLGHDLDPCS  120
AQEVNQMSSQ LERSLRKVRE RKDQLLTEQI ERLKAKERFL LEENAKLHTQ CGARPCQKPL  180
VQEKGVGAAS YNWMNSSQSS GSQTINNSDQ VETRLFIGPP VMRCE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136143RKVRERKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-76MIKC_MADS family protein