PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000133.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 696aa MW: 75892.5 Da PI: 5.8184

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000133.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Rmu_ssc0000133.1_g000002.1 277 PCPEFRK-GTCRQGDACEYAHG 297 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MCSGSKRKPC STDSTMDHEK QEGLRFSFSI LLELAAADDL DGFKSAVEED GHDVDEVSYW 60 YGRRVGSKKM GFEERTPLMI AAMFGSMNVL NYILQTCRVD VNRACGSDRA TALHCAAAGG 120 SGAAAEVVKV LLAASADASS IDVNGNQAGD LIAPAYSSAF NSRKKALEVM LKGDSGFDEA 180 FDFSEQMARE AEGEDQQEIT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD ACEYAHGIFE 300 CWLHPAQYRT RLCKDETGCT RRVCFFAHKT EELRPLYAST GSAVPSPRSF SAGASLDMGS 360 LSPLSLNSPS ALIPSVSTPP MTPTGASSPM NGNMWQNQPN IAPPTLQLPG SRLKSTLSAR 420 DMDLDMEFLS LENHRRRQRL IDELSSPSSG WNNGLSSPSA FAASGNRIGE LNRIGGVRPT 480 NLEDAFGSID PAMLPQLQGL SRDTTASQLQ SPTGIQMRQN MNMQLRSSYS SSPASSPVRG 540 SPLHGFDASG AAAVLSSRSA AFAKQRSQSF IERSANHNYG FSSPADSGTP KTSNLSNWGS 600 PSGKLDWGIQ GEELNKLRKS ASFGYRNNGN SVPTVDEPDV SWVNTLVKDA PGPSRPGPLG 660 FEDQQQQQQC HLDNGDSEIL PAWVEQMYLE QEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MCSGSKRKPC STDSTMDHEK QEGLRFSFSI LLELAAADDL DGFKSAVEED GHDVDEVSYW  60
YGRRVGSKKM GFEERTPLMI AAMFGSMNVL NYILQTCRVD VNRACGSDRA TALHCAAAGG  120
SGAAAEVVKV LLAASADASS IDVNGNQAGD LIAPAYSSAF NSRKKALEVM LKGDSGFDEA  180
FDFSEQMARE AEGEDQQEIT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCT RRVCFFAHKT EELRPLYAST GSAVPSPRSF SAGASLDMGS  360
LSPLSLNSPS ALIPSVSTPP MTPTGASSPM NGNMWQNQPN IAPPTLQLPG SRLKSTLSAR  420
DMDLDMEFLS LENHRRRQRL IDELSSPSSG WNNGLSSPSA FAASGNRIGE LNRIGGVRPT  480
NLEDAFGSID PAMLPQLQGL SRDTTASQLQ SPTGIQMRQN MNMQLRSSYS SSPASSPVRG  540
SPLHGFDASG AAAVLSSRSA AFAKQRSQSF IERSANHNYG FSSPADSGTP KTSNLSNWGS  600
PSGKLDWGIQ GEELNKLRKS ASFGYRNNGN SVPTVDEPDV SWVNTLVKDA PGPSRPGPLG  660
FEDQQQQQQC HLDNGDSEIL PAWVEQMYLE QEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein