PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000134.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 383aa MW: 44701.3 Da PI: 4.4248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000134.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.7	5.5e-24	6	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgk 72 l pG rF P ++el+ +yLk+kv+gk+++ +e i e+d+y ePw++ + + + ++k++yfF++++k +a+ + Rmu_ssc0000134.1_g000011.1 6 LLPGHRFCPMEDELLLYYLKPKVNGKEVPGKESlICELDLYGDqEPWKIWErfearQ--TndlkKNKDLYFFTQKKKVSAKAS 86 579**********************9887777**9754964345441..1344356689********** PP NAM 73 rknratksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 r +r++ sg+Wk + k+++ ++++ g kkt ++ ++r+ ++ +W+m e++l Rmu_ssc0000134.1_g000011.1 87 RISRKVGSGTWKGQAAAKNIYLLDENQkptttlLGFKKTYTYQNKRSV--HHGRWIMYEFEL 146 ****************9984444456666999999999855555..59******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEDHMLLPGH RFCPMEDELL LYYLKPKVNG KEVPGKESLI CELDLYGDQE PWKIWERFEA 60 RQTNDLKKNK DLYFFTQKKK VSAKASRISR KVGSGTWKGQ AAAKNIYLLD ENQKPTTTLL 120 GFKKTYTYQN KRSVHHGRWI MYEFELHKSQ LLPKKEVNKN DYVLCLLRKN DELPERKRKR 180 QQEEMLEEDY VEDGDGDNDL NCDPALLLEE PHEKRQCLLP CSDNNVAAPS LEWTELEQWF 240 NQQFLQPTPL EDEPAVSLQV YEDLGVQKPV TELQLRDENL GQQCHDIPTN TANEMMSGLD 300 FHHDENLEQQ MGDEVGVMAQ GEVYVYGGNL SDVIVGEDWA KSFMEDLMND EQLNTMEDWD 360 KSFMEDLMND EQLNTMEVGN CIK

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEDHMLLPGH RFCPMEDELL LYYLKPKVNG KEVPGKESLI CELDLYGDQE PWKIWERFEA  60
RQTNDLKKNK DLYFFTQKKK VSAKASRISR KVGSGTWKGQ AAAKNIYLLD ENQKPTTTLL  120
GFKKTYTYQN KRSVHHGRWI MYEFELHKSQ LLPKKEVNKN DYVLCLLRKN DELPERKRKR  180
QQEEMLEEDY VEDGDGDNDL NCDPALLLEE PHEKRQCLLP CSDNNVAAPS LEWTELEQWF  240
NQQFLQPTPL EDEPAVSLQV YEDLGVQKPV TELQLRDENL GQQCHDIPTN TANEMMSGLD  300
FHHDENLEQQ MGDEVGVMAQ GEVYVYGGNL SDVIVGEDWA KSFMEDLMND EQLNTMEDWD  360
KSFMEDLMND EQLNTMEVGN CIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	8e-19	NAC family protein