PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000146.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 164aa    MW: 19610 Da    PI: 10.6449
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000146.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-171150342
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                i n+s r +tf kR++g+lKK  E+ +LCd+++avii+s+
  Rmu_ssc0000146.1_g000019.1 11 IANESSRRTTFRKRKKGLLKKVGEITTLCDIKAAVIIYSP 50
                                89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MVRRKVRLHY IANESSRRTT FRKRKKGLLK KVGEITTLCD IKAAVIIYSP FDGEPEVFPS  60
HSEVHELLTK FRDMPQMDKT IKMVNQKTFL RQRIDKVREQ IRKMKRDNRE KEITQVMFGC  120
LKGRTLFDLE MKDLQVLNFI IERNLKELEI KQRATDEQNA NEQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHYIANESSRRTTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-41M-type_MADS family protein