PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000146.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22604 Da    PI: 9.6122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000146.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141148340
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                                i n+s r  tf kR++g+lKK  E+ +LCd+++avii+
  Rmu_ssc0000146.1_g000023.1 11 IANESSRPMTFRKRKKGLLKKEGEITTLCDIKAAVIIY 48
                                89***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MARRKVRLHC IANESSRPMT FRKRKKGLLK KEGEITTLCD IKAAVIIYIP FDSESEVFPR  60
HLEVHELLTK FRDTPQMEKT RMMVDQETFL LQNRQSPGAN QKEKRDNREK EITQVMFSCL  120
KGRTLFDLNM MDLDDLKFII ERNFRELGIK QRVADEQKQE ENQENQLNQV EAAVELGLTR  180
RSAFGEGTSR GVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHCIANESSRPMTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-25M-type_MADS family protein