PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000154.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 332aa    MW: 37302.5 Da    PI: 6.5818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000154.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.6e-152976148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Rmu_ssc0000154.1_g000025.1 29 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNSGLQRCGKSCRLRWINYL 76
                                678*******************************************97 PP
2Myb_DNA-binding452.5e-1482125146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+++ +E+ l+++ +  lG++ W+ Ia++++ gRt++++k++w++
  Rmu_ssc0000154.1_g000025.1  82 RGAFSLQEEHLIIHFHSILGNK-WSQIAARLP-GRTDNEIKNFWNS 125
                                 89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MRKPELSVGK DVKANSNSKN KMMNNKLRKG LWSPEEDEKL MRYMLSNGQG CWSDIARNSG  60
LQRCGKSCRL RWINYLRPDL KRGAFSLQEE HLIIHFHSIL GNKWSQIAAR LPGRTDNEIK  120
NFWNSALKKR LKNNNISTST SSPNESDHSS EPNVNIGGAT PFIPMHNEHD MLMSMMYMDS  180
SSSSSSASMQ VINNSTFAPN FSVLDSSSLL NYVNHTGLTQ LPEAQYGDYG NYLEAGHKMG  240
IEGDLCLPHL ETSRRSLIEN NNGQVVDNIS NNNINHFHND NNNNCFTNTA NNMSFKVDDG  300
DIFGQAEAGG SLRVGEEWDF EGFMQDISCF LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-67MYB family protein