PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000155.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 290aa    MW: 32821.4 Da    PI: 7.1302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000155.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161764148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++l +++ ++G g+W++++   g+ R +k+c++rw +yl
  Rmu_ssc0000155.1_g000011.1 17 KGLWSPEEDQRLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                                678*******************************************97 PP
2Myb_DNA-binding55.31.5e-1770115148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg +T++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Rmu_ssc0000155.1_g000011.1  70 RGTFTKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 115
                                 899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MGCKSSDSPK PKPKHRKGLW SPEEDQRLRN YILKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFTKQEEET ILTLHHMLGN KWSQIAQHLP GRTDNEIKNF WHSYLKKKVA  120
KDNEDQDQME LAQSKSQYTS TSSSDHNLDQ PSPCSEKLTS TQIPSYNESP ILVPQIDHQS  180
QRPSPLPKIL FAEWLSLDHV QGGSIGNNTG IDQHDYNPRA DHGLGHSYSF NNEATFGSSG  240
FHHGPATHEI MNSQFRYDPQ DQIPGTGFAD FISGGDLCSD FTLHDDVMYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-60MYB family protein