PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000162.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 182aa    MW: 20599.8 Da    PI: 6.9374
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000162.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.32.6e-5435130297
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy eplk
  Rmu_ssc0000162.1_g000029.1  35 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYSEPLK 117
                                 89********************************************************************************* PP

                       NF-YB  85 vylkkyrelegek 97 
                                  yl+++relegek
  Rmu_ssc0000162.1_g000029.1 118 RYLNRFRELEGEK 130
                                 ***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MVDNRGNNNN ISPDSREGFN YNFAGDRHHH DEVIKEQDRL LPIANVGRIM KQILPPNAKI  60
SKEAKETMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CWALSTLGFD DYSEPLKRYL  120
NRFRELEGEK AQQSKANSGG EDQRNEVGEV SPTRASTASS SNPLMKFNMI NERGNSSISR  180
RF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-61NF-YB family protein