PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000192.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23974.9 Da    PI: 7.0903
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000192.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-26958150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                krien++nrqvtf+kR+ngi+KKA+E+ vLCda+v++ii +s+gk+ ey 
  Rmu_ssc0000192.1_g000004.1  9 KRIENSTNRQVTFAKRKNGIIKKAKEITVLCDAKVSLIINASSGKMVEYN 58
                                79***********************************************6 PP
2K-box83.35.5e-2872169198
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 y++++gk+l++ak+e+l++el+++kke++ +q ++Rhl+Ged++sL++ eL  Le++Le++l+++R kK++++ +q +  +  
  Rmu_ssc0000192.1_g000004.1  72 YHSQTGKKLWDAKHENLSNELDRIKKENDGMQVQLRHLKGEDITSLNHSELGDLEEALENGLTSVRGKKSDVVQMQRDSHKAA 154
                                 78899999*************************************************************************** PP

                       K-box  84 ekelqeenkaLrkkl 98 
                                 e+e+++ n +L+k+ 
  Rmu_ssc0000192.1_g000004.1 155 EEEHDRLNYELHKQT 169
                                 ************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MGRGKIEIKR IENSTNRQVT FAKRKNGIIK KAKEITVLCD AKVSLIINAS SGKMVEYNSG  60
SPETLLEILD RYHSQTGKKL WDAKHENLSN ELDRIKKEND GMQVQLRHLK GEDITSLNHS  120
ELGDLEEALE NGLTSVRGKK SDVVQMQRDS HKAAEEEHDR LNYELHKQTV KSEENLRDME  180
YHQRMSQMSF FRVQPIQPNL HDDHDRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-74MIKC_MADS family protein