PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000200.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 180aa    MW: 20459 Da    PI: 9.91
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000200.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-4159136178
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 +Cq+++C+adls+ak yhrrhkvC++hskapvvl++g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  Rmu_ssc0000200.1_g000011.1  59 CCQADKCAADLSDAKLYHRRHKVCDHHSKAPVVLLAGISQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNSS 136
                                 6**************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MEESKSKQRK QENPHVVVKK EVEEEEVLYS KKKKLQVVSG SGSGSGSVKN QNLNQMMRCC  60
QADKCAADLS DAKLYHRRHK VCDHHSKAPV VLLAGISQRF CQQCSRFHEL SEFDDTKRSC  120
RRRLAGHNER RRKNSSESYA EGSSRKGTST QSCGKVDDMG SGRIQINIQE NSTCKHFQIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-46SBP family protein