PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000204.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 667aa    MW: 72363.1 Da    PI: 6.9204
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000204.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.7e-27235288155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  Rmu_ssc0000204.1_g000021.1 235 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 288
                                 79*******************.********************************8 PP
2Myb_DNA-binding39.11.7e-12237287148
                                 TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                 r  W+ e+++++v av+qlG +   +k+I + m+  g++++++ s++qk++
  Rmu_ssc0000204.1_g000021.1 237 RVVWSVELHQQFVSAVNQLGLDkaVPKRILELMNvPGLSRENVASHLQKFR 287
                                 678**********************************************97 PP
3Response_reg76.78.4e-26491571109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vdD+ + + +l+++l++  y +v+ ++++++al+ l+ek+  +D++l D+ mp+mdG++ll+ i  e  +lp+i+++a g
  Rmu_ssc0000204.1_g000021.1  49 VLVVDDDTTCLAILEKMLSRCLY-QVTLCSQATDALNHLREKKgyFDVVLSDVHMPDMDGFKLLECIGLEM-DLPVIMMSADG 129
                                 89*********************.***************999999**********************6654.8********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                   + + + ++ Ga d+l Kp+ +eel +
  Rmu_ssc0000204.1_g000021.1 130 RTSAVMKGIRHGACDYLIKPVREEELKN 157
                                 *************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MAALQSVVQS CLSTTTASSF GSCKGGGGAS SASANVMAVH DQFPAGLRVL VVDDDTTCLA  60
ILEKMLSRCL YQVTLCSQAT DALNHLREKK GYFDVVLSDV HMPDMDGFKL LECIGLEMDL  120
PVIMMSADGR TSAVMKGIRH GACDYLIKPV REEELKNIWQ HVARKKLNEN KEIEHSGSLE  180
DNDRHKRGIN DVEYTSSVIE GTEGTARTRS QKKRSSGKED EDGDMENDDM STSKKPRVVW  240
SVELHQQFVS AVNQLGLDKA VPKRILELMN VPGLSRENVA SHLQKFRLYL KRLSVEQQQS  300
ANAFCGPVES NVKLVSHGNR FDIQALAAAG QIPPQTLAAL QAELLGQPVG NPGSTIDQPA  360
ILHASLQRPK RAPVDHGVAF GQPLIKRQSN VSVHFPQCII SAEDASAGGP WRSNSLGTVA  420
PNSNLGGFST QNSNVFMDTL QQEQRPQPKR HQQSLLTEPV RTINVQPSCL VVPSQSSASF  480
QAGNSPASVN QSCSFNRSTA IDYSLLSAQS NNNSSLNIGR ISNGHHKTPG ILSGYSATGS  540
LSTPSSSVIA ESSISPQNSA VTYSDARQLT GRLHNMSNIQ DLYVPKSGEM LDQGAYRNLG  600
FVGKETRIPS RFDEFESQSN LNHGNIHAEN IGNPVKQEPN MGFVDNAKGS TIFQQFSSSD  660
LMSVFNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115ARR-B family protein