PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000213.1_g000057.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 260aa MW: 28774 Da PI: 8.09

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000213.1_g000057.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.8	9.1e-14	30	91	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ +t++ +++L+elF++ r ++ e+ +++ +l +++ ++V++WF N+Ra+ek+ Rmu_ssc0000213.1_g000057.1 30 STRWIPTTDHIRILKELFYNkgVRSLTIEQVQRICLQLkwygKIEFKNVYYWFVNQRAREKQ 91 58***************7789***********************************97 PP
2	Wus_type_Homeobox	79.6	4.2e-26	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++ i+iL+el++ +G+r+ + e++qri +L+ yGkie kNV+yWF N++aRe+qk+ Rmu_ssc0000213.1_g000057.1 29 SSTRWIPTTDHIRILKELFYnKGVRSLTIEQVQRICLQLKWYGKIEFKNVYYWFVNQRAREKQKK 93 689************98769***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MEPQTQQPTE DGGSNKAAGS SANMLRKKSS TRWIPTTDHI RILKELFYNK GVRSLTIEQV 60 QRICLQLKWY GKIEFKNVYY WFVNQRAREK QKKKSTSDVH VPMQRSGLVG DDNVTNWKHE 120 DQYINFGSSA PASASASSAS VMIAFNGQIG NYGGYESMNM EKSARDCSIS AGGGTSSSFF 180 DMNVEQTFME QRGEDHQEIE TLSLLPVHGE DIFGNMKTTS DGGGDHGGGS HTSLELSLSC 240 EGKAGKSFRS RWFGLVASRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-24	WOX family protein