PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000240.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 88aa    MW: 10081.5 Da    PI: 6.4547
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000240.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.63.6e-122788266
                        FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66
                                 Y+eY+ ++ Fsvr+ +++k+  ++ +++ +++Cskeg++ +++ + e ++  r   rtgC ak+
  Rmu_ssc0000240.1_g000012.1 27 LYCEYGARMEFSVRIMRKRKT--SNVVKQVNYCCSKEGFKLDSDPS-EVKKADRLDIRTGCIAKI 88
                                7***************98888..8889***************9999.99999*********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MIVNCQASND DELYGVIVNS EEEAYNLYCE YGARMEFSVR IMRKRKTSNV VKQVNYCCSK  60
EGFKLDSDPS EVKKADRLDI RTGCIAKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247MRKRKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-06FAR1 family protein