PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000240.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25883.3 Da    PI: 9.0153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000240.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-1794148256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ ++tkeq + Le+ F+++++++ +++  LA  l+L+ rqV vWFqNrRa+ k
  Rmu_ssc0000240.1_g000024.1  94 RKKLRLTKEQSTLLEDSFKRHSTLNPNQKHALAGLLNLKPRQVEVWFQNRRARTK 148
                                 788899***********************************************98 PP
2HD-ZIP_I/II120.68.4e-3994182189
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rl+keq++lLE+sF+++++L+p++K++la  L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L+ke
  Rmu_ssc0000240.1_g000024.1  94 RKKLRLTKEQSTLLEDSFKRHSTLNPNQKHALAGLLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCESLSDENQKLKKE 176
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLre 89 
                                  +eL++
  Rmu_ssc0000240.1_g000024.1 177 LQELKS 182
                                 ****94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGDYDPEACN TSLQLGLGSG GYAPRQEMRT KDRPLVCLDL SFALRPKPEK IANLDDHMAN  60
GSSLKTNIFY EDEEDRRSTD HTDSEITNSK NGARKKLRLT KEQSTLLEDS FKRHSTLNPN  120
QKHALAGLLN LKPRQVEVWF QNRRARTKLK QTEVDCEFLK KWCESLSDEN QKLKKELQEL  180
KSLSVNGASS PLLTHQIPKT TMLTMCSSCE RKAKANDKYP NNEAAAKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-45HD-ZIP family protein