PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000249.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 204aa    MW: 22584.9 Da    PI: 5.6311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000249.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122749123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C++ Fs+   L  H++ H
  Rmu_ssc0000249.1_g000010.1 27 YECTFCKRGFSNAQALGGHMNIH 49
                                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MESGDQQTPE NSGDQQVTSQ IAAAKSYECT FCKRGFSNAQ ALGGHMNIHR KDKAKLKQVS  60
SSTNVVETKQ QQRLLLEIPK MPPSYSAILP KINQSITTLE AINMPHADHI ERSATTIRGS  120
SWPADWFLNA KEGDNQLNQV QQLPLFSQAP SDQDHQYQGG QQQQPEVQGD QSEKGSDLDL  180
ELRLGPEPED SSSTSAKATT RKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.18e-18C2H2 family protein