PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000291.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 246aa MW: 28119.7 Da PI: 9.8482

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000291.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59	1.6e-18	56	142	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Y++Y+k++GF vrk++s+k ++g+++ t C + gk ++++++ + +++++ +t+Ck +++ k+ dgkw++++ +l Rmu_ssc0000291.1_g000011.1 56 DYYRKYGKQLGFPVRKRTSRKG-DDGNTKYITISCGRAGKFKSKSSN---SLKPHPSVKTDCKTLIRLGKSLDGKWKINSTKL 134 69*************99998.8888**********999888...999************************** PP FAR1 84 eHnHelap 91 eHnH l+p Rmu_ssc0000291.1_g000011.1 135 EHNHGLSP 142 ***986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MERLSNESEN IILTNDQGTV DDSPKSLENN QEIKVEEIMQ VPSVEMSFDS IDEAYDYYRK 60 YGKQLGFPVR KRTSRKGDDG NTKYITISCG RAGKFKSKSS NSLKPHPSVK TDCKTLIRLG 120 KSLDGKWKIN STKLEHNHGL SPRKSRYFST NSELSSSIKR RLELNDVARI GLNKSYNSIV 180 VEAQGYDNVS FLEKDAQNHI EKIRRLRLKE GDATAVNTYF LDMQDKIASF FYAIAINEKG 240 RLRNLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	4e-25	FAR1 family protein