PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000295.1_g000041.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 230aa    MW: 25582.4 Da    PI: 7.5567
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000295.1_g000041.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.3e-163191357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                +R+++ ++q+++L+el+++   r p+aee++++  +l    +++ ++V++WFqN +a+e++
  Rmu_ssc0000295.1_g000041.1 31 TRWNPPTDQIRILKELYYNkgVRSPTAEEIARICLQLrrygNIEGKNVFYWFQNLKARERQ 91
                                7****************97689*************************************97 PP
2Wus_type_Homeobox1018.5e-333093365
           Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                 tRW+P ++Qi+iL+ely+ +G+r+P++eei ri  +L++yG+ie+kNVfyWFQN kaRerqk+
  Rmu_ssc0000295.1_g000041.1 30 GTRWNPPTDQIRILKELYYnKGVRSPTAEEIARICLQLRRYGNIEGKNVFYWFQNLKARERQKK 93
                                69***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MQPQTRQPTE DGGSNKAVRS STNMFCRRSG TRWNPPTDQI RILKELYYNK GVRSPTAEEI  60
ARICLQLRRY GNIEGKNVFY WFQNLKARER QKKRFVSDVH VPMQSSGLVG NGNGTNWKPE  120
DQYINFGSSA SASASSAGVI AFNEHMGNYG GYGSVTMEIE TLPLFPMHGE DIFGNMKTTS  180
EGGGGYYYYS DGWGGYNGGS HISLELSLNS YGSALFSLEG VFSVREETEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-32WOX family protein