PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000308.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28376.1 Da    PI: 7.0501
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000308.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48.1e-28959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                k+ien+  rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss
  Rmu_ssc0000308.1_g000004.1  9 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 59
                                68***********************************************96 PP
2K-box71.72.2e-248416915100
                       K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                    +  ++ Lk+e+e+Lq++q +llG+dL+sLslkeLq+Le+qL ++l ++++kK++ll+eq+e+++ ke+++ +en++Lrk+
  Rmu_ssc0000308.1_g000004.1  84 RAEEDAVDVLKDELEKLQQNQLRLLGNDLSSLSLKELQKLENQLTEGLFSVKEKKEKLLMEQLEQSRVKEQRAIHENETLRKQ 166
                                 455678999************************************************************************** PP

                       K-box  98 lee 100
                                 +ee
  Rmu_ssc0000308.1_g000004.1 167 VEE 169
                                 987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGKIEIKK IENTNSRQVT FSKRRAGLLK KAQELAILCD AEVAVIVFSN TGKLFEFSSA  60
GMKRTIARYS KCYESSETAL VESRAEEDAV DVLKDELEKL QQNQLRLLGN DLSSLSLKEL  120
QKLENQLTEG LFSVKEKKEK LLMEQLEQSR VKEQRAIHEN ETLRKQVEEL RRLFPQADHA  180
VPSYLDYCPV EKQNSPVHHG AKSPDLVSNF ALDNGDSDTT LQLGLPSDTY RKRKAPERES  240
HSNDSGSQLG L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-72MIKC_MADS family protein