PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000330.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 713aa    MW: 78743.5 Da    PI: 6.8707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000330.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-202479156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                +++ +++t++q+++Le +F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Rmu_ssc0000330.1_g000002.1 24 KKRYHRHTANQIQRLEGMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79
                                678899***********************************************998 PP
2START182.32.7e-572234472206
                                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...C CS
                       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...q 71 
                                 +a  a++el+++ + ++p+W+kss    + +n + + ++f+++ +       ++ea+rasgvv+m+   lv  ++d+++    
  Rmu_ssc0000330.1_g000002.1 223 IAANAMEELLRLLQTNDPLWMKSStdgrDVLNLESYERIFPRATThlknpnLRIEASRASGVVIMNGLALVDMIMDSNKfgeL 305
                                 67889********************999999999999***99888*********************************77777 PP

                                 T-TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                       START  72 Wdetlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147
                                 + + +  a t+evissg      g lqlm+ elq+lsplvp R+f+f+Ry+ q ++g w+ivdvS d +++++   +  R+++
  Rmu_ssc0000330.1_g000002.1 306 FPTIVSMARTIEVISSGmlgshsGSLQLMYKELQVLSPLVPtREFYFLRYCHQIEQGHWAIVDVSYDFPRDNQ-FTNQCRSHR 387
                                 777777******************************************************************9.7999***** PP

                                 SSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 148 lpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                                 lpSg+li++++ng+skvtwvehv+ +++ p h l+r l++sg+a+ga +w+  lqr ce+
  Rmu_ssc0000330.1_g000002.1 388 LPSGCLIQDMPNGYSKVTWVEHVEIEEKAPiHRLYRDLIHSGQAFGAERWLVVLQRMCER 447
                                 **********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    
MEFGSSAGGG SGGDHDASDS QRRKKRYHRH TANQIQRLEG MFKDCPHPDE KQRLQLSREL  60
GLAPRQIKFW FQNRRTQMKA QHERADNSAL RSENDKIRCE NIAIREALKN VICPSCGVPP  120
INEDNYFDEH KLRMENAQLK EELDRVSSIA AKYIGRPISQ LPPVQPIHIS PLDLSMASFG  180
GHAMGGPSLD LDLLTGSTSS TIPSLPYQPM GISDMDKSLM TDIAANAMEE LLRLLQTNDP  240
LWMKSSTDGR DVLNLESYER IFPRATTHLK NPNLRIEASR ASGVVIMNGL ALVDMIMDSN  300
KFGELFPTIV SMARTIEVIS SGMLGSHSGS LQLMYKELQV LSPLVPTREF YFLRYCHQIE  360
QGHWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVTWVEHV EIEEKAPIHR  420
LYRDLIHSGQ AFGAERWLVV LQRMCERFAC LMVSGTSTRD LEGVIPSPEG KRSMMKLAQR  480
MVNNFCASIS TSNGHRWTTI SGMNEVGVRV TIHKSTDPGK PNGVVLSAAT TIWLPLSPQT  540
VFNFFKDERT RPQWDVLSNG NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN NMLILQESCI  600
DSSGSVVVYC PVDLPAINIA MSGEDPSYIP LLPSGFTISP DGPQDQGDTS ASTSSCSNVN  660
HIGGGGSLIT VAFQILVSSL PSAKLNMESV NTVNNLIGTT VQQIKSALNC SGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein