PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000339.1_g000030.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 451aa MW: 50026.5 Da PI: 6.0098

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000339.1_g000030.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.8	1.3e-09	24	67	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v Rmu_ssc0000339.1_g000030.1 24 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnqlarrHERV 67 578*****************************657788888876 PP
2	CCT	68.1	2.4e-23	389	432	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Rmu_ssc0000339.1_g000030.1 389 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 432 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MISNKKAAAS ASAATANVFG GKTARACDSC IKKRARWYCA ADDAFLCQAC DSSVHSANQL 60 ARRHERVRLK TASSILKSST NSGSCDKSEV PSWHRGFTKK ARTPRHGKSG THRNRFPLVP 120 EFGADDLSYE ENEEEQLVYR VPVYDPFVAE LCTSPNSNTV SNDVNGNESK AVSKPNYSRV 180 GSGNSSSSHG FDLPSDMDLA NFAADVDSLL GRGLDDDKCF GMEGLGLLDC HEKESTTTEE 240 GSTGRVKLED EEDAYMACQA ETEIDLMREQ FVLNFEDYDD SPASCAEDEE DDDKLGVTMS 300 HAEMKSSSEE HKSCKKRKIF LRLDYDAVIT KWDSESKGSP WTFGERPDLD SDCLPDSMGT 360 SNGAELIHYP YGDLNGVIGL HPAMTDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK 420 RPRMKGRFVK RTSFAASGST FPTLSKEVMD S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MISNKKAAAS ASAATANVFG GKTARACDSC IKKRARWYCA ADDAFLCQAC DSSVHSANQL  60
ARRHERVRLK TASSILKSST NSGSCDKSEV PSWHRGFTKK ARTPRHGKSG THRNRFPLVP  120
EFGADDLSYE ENEEEQLVYR VPVYDPFVAE LCTSPNSNTV SNDVNGNESK AVSKPNYSRV  180
GSGNSSSSHG FDLPSDMDLA NFAADVDSLL GRGLDDDKCF GMEGLGLLDC HEKESTTTEE  240
GSTGRVKLED EEDAYMACQA ETEIDLMREQ FVLNFEDYDD SPASCAEDEE DDDKLGVTMS  300
HAEMKSSSEE HKSCKKRKIF LRLDYDAVIT KWDSESKGSP WTFGERPDLD SDCLPDSMGT  360
SNGAELIHYP YGDLNGVIGL HPAMTDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK  420
RPRMKGRFVK RTSFAASGST FPTLSKEVMD S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	416	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	9e-92	CO-like family protein