PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000341.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 336aa    MW: 37565.6 Da    PI: 7.777
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000341.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.8e-171561147
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                k+i n   r+vtfskRr g+ KK +EL +LC+aev v++fs++ k +
  Rmu_ssc0000341.1_g000016.1 15 KKIANADDRHVTFSKRRSGVYKKCNELATLCGAEVGVVVFSESEKPF 61
                                6899**************************************98755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MEGRKTRGRQ KIEIKKIANA DDRHVTFSKR RSGVYKKCNE LATLCGAEVG VVVFSESEKP  60
FSYGNPSIES IADRFLNLQP PQENSDDRIA GSLVGAYKHA RYMEILNKHN ELEDKLRDEQ  120
LREKVLLQKE RARASAEQEG LGWWQRPIKE LDSEELKQIS ARVWGGGVSF EIVLPCIYST  180
SVESFTGFGV QGHSWSSEVI RGGVLADGDD GWVFSSSLTI GGIWDHGDFG LWDQAGGFAE  240
GSGSRSGIRV VLANGFGSGI RVEIGLGLWL TIFGGLYISY KIGLALVHYW YWIRDPCLWY  300
LFVKDRLPTW PCSDTLGRLR SLGGRVPSFR CQVGFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.18e-33M-type_MADS family protein