PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000355.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 337aa    MW: 37163.5 Da    PI: 9.3982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000355.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.86e-25111392128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr 76 
                                 ppGfrFhP+++ l+++yL +k ++  ++   ++i+e+ d+   eP++L++       +k+++++wyf++   +++      ++
  Rmu_ssc0000355.1_g000010.1  11 PPGFRFHPSEQKLLSYYLSNKKANPAMPGgYNTIRELsDLRGREPSELQNwscysyGYKGRKRHWYFYTAGVSAE------EK 87 
                                 9********************999997772455***99**********966787765666888*****9987754......56 PP

                         NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  tk+g Wk +gk ++v+s +g + g ++++v+y g+   ++ t Wv+ +y+l
  Rmu_ssc0000355.1_g000010.1  88 NTKQGCWKRKGKVRDVFSLQGVVLGARTSFVYYYGSPDAASPTAWVLYQYAL 139
                                 7899**********************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MADSKSTDAF PPGFRFHPSE QKLLSYYLSN KKANPAMPGG YNTIRELSDL RGREPSELQN  60
WSCYSYGYKG RKRHWYFYTA GVSAEEKNTK QGCWKRKGKV RDVFSLQGVV LGARTSFVYY  120
YGSPDAASPT AWVLYQYALA NHVEARVSQS RPAAAATPSP IEASVPPSSL LQFFDLTGPL  180
LPSCPAQGPR PRGASMPYYG GPMIRQGQQL PVRPPHNIAP GVYHLPPGGN MPELLAPLPG  240
YFLPHVPPVQ SLPRSVPTVL TTALVNATPE ERRNMLGEEL FPLVEMWEKD KAAKVTGMLL  300
ERDNPEILHL LESPEALRAK IAEAMDVLAK VAADGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.28e-18NAC family protein