PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000357.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 226aa    MW: 25788.8 Da    PI: 10.0102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000357.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-14471231395
                                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 ++  ++p+ f+++++g    +++  l+ + g+ W v+l  +  ++r+v+ kGW++F+k + L++gDf++F+ d+ s f   v 
  Rmu_ssc0000357.1_g000023.1  47 EHKPRIPRAFVKNFNGRV--PRMCGLRGPCGNLWAVNL--KEIKDRVVFHKGWQSFAKHHFLEVGDFLTFTKDDGSIF--DVI 123
                                 45578******8886663..45799*************..*******************************4433444..555 PP
2B339.21.3e-121532133294
                                 --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                          B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                 ++kt++l+d++grsW +kl  + ++++ +  +GW + +k+n++  gD++v+++++ s  +l+v
  Rmu_ssc0000357.1_g000023.1 153 NNKTIMLQDPTGRSWAIKL--NETPRGQMRMEGWCNVCKENQISFGDTLVIEVVKYSVLQLHV 213
                                 5689***************..99999999999********************88777776666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MRGKRWQGAI TPLELGKVIS HHCNVKKLAD PKRGHSVTWD AASKYQEHKP RIPRAFVKNF  60
NGRVPRMCGL RGPCGNLWAV NLKEIKDRVV FHKGWQSFAK HHFLEVGDFL TFTKDDGSIF  120
DVIIYDKSYC EKNVETAKSR IGNVVDRTIS LMNNKTIMLQ DPTGRSWAIK LNETPRGQMR  180
MEGWCNVCKE NQISFGDTLV IEVVKYSVLQ LHVYKVGAAL DVETQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-14B3 family protein