PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000368.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 668aa MW: 73428.8 Da PI: 6.0358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000368.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	499	545	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A++YI++Lq Rmu_ssc0000368.1_g000016.1 499 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIDYINELQ 545 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MASLCPRLFL YCLIYLLPHD PIAETEMKME MGLGGGVWKD EDKAMVAAVL GTRAFDYLIS 60 SSVSSNENSC MGIGTDESLH SKLSDLVEPP NASNFSWNYA IFWQISRSNS GDWVLCWGDG 120 SCREPKEGED SEASRILSLR LEDETEQTMR KIVLQKLHTL FGSSDEYNGA LGLDRVTDTE 180 MLFLASMYFS FPRGEGGPGK CLASGKQVWL SDLLKSGSDY CVRSFLARSA GIQTIVLVPT 240 DVGVVELGSV RCIPENLEML QSIRLLFSTQ ASLTRAKPMA ALPVMSNKRD EIAAQQNHLS 300 TVERGGEGVP KIFGQDLNSG NPGRTRYREK LAVRKVEERP WDAYSNGNRI AFSSPQNGIH 360 GSSWGQSHVG VKQGSPAGVY ASQGPVNNLQ ELANGGRDDF RLGTGLRFLV LKTEFMELAN 420 GGRDDFRLKP YQPQKQAPMQ IDFSGATSRP SVVSRPIVVE SENSDAEAPC KEELPGTAEE 480 RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIDY 540 INELQAKLKV MESERESVGG ASRDTSALVA NPSSENQIRA PHVDIQAVHD EVVVSVSCPL 600 DSHPASRIIQ AFKEAQISVI ESKFTAANDS VFHTFVVKSE GSEQLTKEKL IAAFSRESNS 660 LQSLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MASLCPRLFL YCLIYLLPHD PIAETEMKME MGLGGGVWKD EDKAMVAAVL GTRAFDYLIS  60
SSVSSNENSC MGIGTDESLH SKLSDLVEPP NASNFSWNYA IFWQISRSNS GDWVLCWGDG  120
SCREPKEGED SEASRILSLR LEDETEQTMR KIVLQKLHTL FGSSDEYNGA LGLDRVTDTE  180
MLFLASMYFS FPRGEGGPGK CLASGKQVWL SDLLKSGSDY CVRSFLARSA GIQTIVLVPT  240
DVGVVELGSV RCIPENLEML QSIRLLFSTQ ASLTRAKPMA ALPVMSNKRD EIAAQQNHLS  300
TVERGGEGVP KIFGQDLNSG NPGRTRYREK LAVRKVEERP WDAYSNGNRI AFSSPQNGIH  360
GSSWGQSHVG VKQGSPAGVY ASQGPVNNLQ ELANGGRDDF RLGTGLRFLV LKTEFMELAN  420
GGRDDFRLKP YQPQKQAPMQ IDFSGATSRP SVVSRPIVVE SENSDAEAPC KEELPGTAEE  480
RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIDY  540
INELQAKLKV MESERESVGG ASRDTSALVA NPSSENQIRA PHVDIQAVHD EVVVSVSCPL  600
DSHPASRIIQ AFKEAQISVI ESKFTAANDS VFHTFVVKSE GSEQLTKEKL IAAFSRESNS  660
LQSLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	481	489	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein