PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000368.1_g000058.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 284aa    MW: 32284.4 Da    PI: 8.7958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000368.1_g000058.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Rmu_ssc0000368.1_g000058.1 14 RGPWTPREDTLLTKYIEAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                                89******************************99************97 PP
2Myb_DNA-binding53.55.3e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Rmu_ssc0000368.1_g000058.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                                 7999******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MGRAPCCSKV GLHRGPWTPR EDTLLTKYIE AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLMSEG  120
TDPNTHQKLS QPPAPKENKR KKKQNHKAKN KNNTEDRIVP QKPKVHLPKP TRVTSFVNLP  180
RNDSFTTAST TVSSSQDQVL DHVNNIIPWS DFKEGGVVFS VIDGSSSDFE CDQSRIILNV  240
VAGDDEGHNL ENIYEEYLQA LLKTTDQDQN CQVELDSFAE SLLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-69MYB family protein