PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000372.1_g000047.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 240aa MW: 26477.9 Da PI: 10.3136

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000372.1_g000047.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.6	4.8e-30	48	147	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceae 76 + +kdrhsk++T++++Rd R+Rl a++a++f+d+qd+LG+d++sk ++W +++ak+ai+el+ + +s+ + + Rmu_ssc0000372.1_g000047.1 48 TDRKDRHSKVYTSKSPRDHRIRLTAHTAIQFYDVQDRLGYDRPSKVVDWDIKKAKAAIDELPPWnlnsisvqT-TSS-PTVPI 128 679************************************************************9888776531.222.22333 PP TCP 77 sssssasnsssgkaaksaa 95 s ++++n s + ++ +a+ Rmu_ssc0000372.1_g000047.1 129 SAAQNTQNASLHFSMVEAP 147 3334444333332222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGESHNNLHH RAMTSSSAAS LLGLGIRTAS SSTASKIVEV RGHILRATDR KDRHSKVYTS 60 KSPRDHRIRL TAHTAIQFYD VQDRLGYDRP SKVVDWDIKK AKAAIDELPP WNLNSISVQT 120 TSSPTVPISA AQNTQNASLH FSMVEAPSSL SANRQGAMMG SSGVAELVNQ NSSNFLQVRM 180 VWRWCCLSGT TERMAGWDWS CDLRVEGWQG LSFLSMVYKR GSEERTRVVV AKLSAAAGMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	8e-37	TCP family protein