PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000378.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 200aa    MW: 22618.5 Da    PI: 9.7944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000378.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-17146192148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g WT eEd +l ++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Rmu_ssc0000378.1_g000003.1 146 KGQWTDEEDRKLMRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 192
                                 799*****************************.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEGEDGAASD HLHHHHGVYG FQNNHIQTPH QHHNQLFRPG PPLTAIDRFL WSQNNAKNKD  60
RLVSSNGFSS FGGAMGDLQT CSNWPPSSLR EASLDELLFL DHGEAMTWPP EKIQNPNMGF  120
KEDQVKVGSK GVGKKAKKGS SVPLIKGQWT DEEDRKLMRL VKQYGVRKWA QIAEKLVGRA  180
GKQCRERWHN HLRPDIKVCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-29MYB family protein