PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000398.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 153aa    MW: 17757.1 Da    PI: 6.351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000398.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.81.9e-14131446128
                         NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpkkvka.....eekewyfFskrdkkyatgkrknr.at 78 
                                  FhPtd++l+  +L +++++ + +  +++++e++iy +    Pwd+ + +++     +++ +yfFs+ +k  +  +  +r   
  Rmu_ssc0000398.1_g000019.1  13 TFHPTDSDLLGTHLYNRIKSPTpIGGKQTFPEIEIYGTtglPPWDIWR-IYEpskfpHQDYIYFFSRVKKLGS--RCFRRiGC 92 
                                 5******************99876666668888877654448****63.222222334446688887766433..33444456 PP

                         NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkg..ektdWvmheyrl 128
                                 + g+W++t   k+++++  +e  g  + + + ++ + +g  +++ W+m+e+++
  Rmu_ssc0000398.1_g000019.1  93 DGGTWSETEAAKPIYVSgIEESYGKLRKFRYENN-KDRGfeHHAAWLMDEFTI 144
                                 79**************844455777778888744.333311689*******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MSLEDLDVEV VKTFHPTDSD LLGTHLYNRI KSPTPIGGKQ TFPEIEIYGT TGLPPWDIWR  60
IYEPSKFPHQ DYIYFFSRVK KLGSRCFRRI GCDGGTWSET EAAKPIYVSG IEESYGKLRK  120
FRYENNKDRG FEHHAAWLMD EFTINQALDL ALC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.16e-07NAC family protein