PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000400.1_g000103.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 137aa    MW: 15999.3 Da    PI: 10.2383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000400.1_g000103.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.3e-1822107288
                        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                 +Yn+Y ++ GFs+r  k +k   +g   +r fvCs eg+r ++k++    +++raetr gC+ak+k++ +  + k+ v +++ 
  Rmu_ssc0000400.1_g000103.1  22 CYNRYTYRFGFSTRLIKAHKY-SSGLLRDRLFVCSAEGTRGRDKRN-LYVKSHRAETRFGCRAKMKIRYDLlSRKFSVVEFVA 102
                                 7*************9887776.6888*****************999.89999******************99*********** PP

                        FAR1  84 eHnHe 88 
                                 +H+H 
  Rmu_ssc0000400.1_g000103.1 103 DHTHV 107
                                 ****5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MRQELILVVG MEFETEDDAH ACYNRYTYRF GFSTRLIKAH KYSSGLLRDR LFVCSAEGTR  60
GRDKRNLYVK SHRAETRFGC RAKMKIRYDL LSRKFSVVEF VADHTHVTST PSKAHLFRSH  120
RKISLAQIVQ ADMAYDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1 family protein