PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000422.1_g000026.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 298aa MW: 33076.2 Da PI: 4.5846

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000422.1_g000026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	108.9	3.2e-34	30	115	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf+ Rmu_ssc0000422.1_g000026.1 30 RWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKAR-PEDAKTCPYFH 111 8******************************************************************98.99999** PP trihelix 84 qlea 87 +l+a Rmu_ssc0000422.1_g000026.1 112 ELDA 115 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MAVPEQQVAP PQENVVGSGG GFEATTSSSR WPKAEVLALI KLRSGLETRY QEAGPKGPLW 60 EEISAGMQRM GYKRNPKRCK EKWENINKYF KKVKESNKAR PEDAKTCPYF HELDALYRKR 120 VLGGGGSSSS LGNQNIQQQP PATQGTVAAS VPAPQTQGTV AATDQSGNKN GDHSPNLQKN 180 LFGDAPEEAA KKPEDIVKEL MGQQQQQQQH HHHPQQLLNQ QGVEQQLVVE DYDRVEEADS 240 DINLDQDEEE DEDDEEDEEM DEESRKMDYK IEFQKQQNTG PSSNGGGNGA PSFLAMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-52	Trihelix family protein