PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000433.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 131aa    MW: 14933.2 Da    PI: 10.0704
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000433.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.6e-2144129190
                        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                                 +fYn+YA e+GFsvr+s++ ksk+  e+++++++C ke ++++++      ++++   rtgC ak+   k+  g +++t++++
  Rmu_ssc0000433.1_g000004.1  44 EFYNKYAFEAGFSVRRSSTAKSKDGSETIRQELCCRKEWHSQKHTAL---PKKRKGIIRTGCLAKIAAVKR-CGIYVITQFKE 122
                                 6*************************************999887766...7888999*********98888.8********** PP

                        FAR1  84 eHnHela 90 
                                  HnH+l+
  Rmu_ssc0000433.1_g000004.1 123 AHNHPLT 129
                                 *****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MFQAMNLGSV SCSAETTEVY TPQVADELKP TKNREFRTLD KLFEFYNKYA FEAGFSVRRS  60
STAKSKDGSE TIRQELCCRK EWHSQKHTAL PKKRKGIIRT GCLAKIAAVK RCGIYVITQF  120
KEAHNHPLTT P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-12FAR1 family protein