PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000434.1_g000038.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 919aa MW: 100998 Da PI: 5.759

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000434.1_g000038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.7	4.8e-18	771	819	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++++ledl+ yF+l+ ++A+ eL +++ v+Kr CR++GI RWP Rkik Rmu_ssc0000434.1_g000038.1 771 AKMKLEDLRVYFHLTFEEACEELRLSAAVVKRLCREFGIGRWPGRKIKA 819 7899*******************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MADIPWDVLP YHDPYNQEVP DILSSENDSF DLSLQNISAL LDEVVVPPSP HSHAVPVFDN 60 DIQNINNPIP FNAPVWNFGN NASLSSNGGG GSPTISLADH FSEIFGAEAN TISLPDLPSQ 120 IFGAGGNSIL LADIPSHIFE TGGNIVSLPD LPSQNFRARG NTSSLPDLPL QFFRVGENSS 180 HSLDHHPSHI FRAGGDSSIN PVAEIFGPRR NTISLEDHRS QISRAGEKSI LVENHPSQIF 240 RAGGESSTNP LAEIFIPRGS TISLEDHPSQ ISRVGENSIS VANHLSQIFR AGGESSLNPL 300 AEIFEARKRK IALEDHPSQI FRTRGNINLA ANPPSLFFGS RGSTNSLADH PSQLYGEGGS 360 AFNSLDDHPS HNFRAEGESS MNPLAEIFGA RGSLSLEDHP SHIFRAGEQS STNPLAEIFG 420 AKKSKVSLVD HPSQIFRAGG ESSTNPLAEI FGAKKSKVSL EDHPLQIFRA GGESSINPLA 480 EIFTTRKSTI SLEDHPSQIF RAGGELSTNP LAEIFEARKS SVSLEDHPSQ IFRTGGNSIS 540 VANHPLQIFG SGRNSISLAD HPSQLYEAGG LTSNSLDDHP LYISGAEGEL SFGQNLNHNL 600 EGFGNNSTLR PLPLNRLPRQ PIPSSCCGCQ VLREIFHANK RRANVFHNSG ASSEPLYESF 660 DFRTKSLKEV KHFLTRYCEE RKAEGYIKQL DPMQPFFQPP FVGMDEDEWE DVLTYPEEYI 720 PEDSDVDDFD LPNLDEMERQ PADKASSGNW KRKGPAKRPR LSLPEQRERA AKMKLEDLRV 780 YFHLTFEEAC EELRLSAAVV KRLCREFGIG RWPGRKIKAI SKMISNLQPL LFSYSESTRV 840 HIAAKIESLE KEIAILSRTA ASSCHPLLPN ISLPQFRAEF LYIDNSNFEI PYGLNLRLAC 900 NRVRAIGLLM IGSTIGSVV

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MADIPWDVLP YHDPYNQEVP DILSSENDSF DLSLQNISAL LDEVVVPPSP HSHAVPVFDN  60
DIQNINNPIP FNAPVWNFGN NASLSSNGGG GSPTISLADH FSEIFGAEAN TISLPDLPSQ  120
IFGAGGNSIL LADIPSHIFE TGGNIVSLPD LPSQNFRARG NTSSLPDLPL QFFRVGENSS  180
HSLDHHPSHI FRAGGDSSIN PVAEIFGPRR NTISLEDHRS QISRAGEKSI LVENHPSQIF  240
RAGGESSTNP LAEIFIPRGS TISLEDHPSQ ISRVGENSIS VANHLSQIFR AGGESSLNPL  300
AEIFEARKRK IALEDHPSQI FRTRGNINLA ANPPSLFFGS RGSTNSLADH PSQLYGEGGS  360
AFNSLDDHPS HNFRAEGESS MNPLAEIFGA RGSLSLEDHP SHIFRAGEQS STNPLAEIFG  420
AKKSKVSLVD HPSQIFRAGG ESSTNPLAEI FGAKKSKVSL EDHPLQIFRA GGESSINPLA  480
EIFTTRKSTI SLEDHPSQIF RAGGELSTNP LAEIFEARKS SVSLEDHPSQ IFRTGGNSIS  540
VANHPLQIFG SGRNSISLAD HPSQLYEAGG LTSNSLDDHP LYISGAEGEL SFGQNLNHNL  600
EGFGNNSTLR PLPLNRLPRQ PIPSSCCGCQ VLREIFHANK RRANVFHNSG ASSEPLYESF  660
DFRTKSLKEV KHFLTRYCEE RKAEGYIKQL DPMQPFFQPP FVGMDEDEWE DVLTYPEEYI  720
PEDSDVDDFD LPNLDEMERQ PADKASSGNW KRKGPAKRPR LSLPEQRERA AKMKLEDLRV  780
YFHLTFEEAC EELRLSAAVV KRLCREFGIG RWPGRKIKAI SKMISNLQPL LFSYSESTRV  840
HIAAKIESLE KEIAILSRTA ASSCHPLLPN ISLPQFRAEF LYIDNSNFEI PYGLNLRLAC  900
NRVRAIGLLM IGSTIGSVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-11	Nin-like family protein