PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000438.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 259aa    MW: 28135.8 Da    PI: 4.5399
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000438.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-1647107357
                                 --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_ssc0000438.1_g000029.1  47 NRWAPTPAQLRILQGLYYDkgYKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARERQ 107
                                 7****************96579*************************************97 PP
2Wus_type_Homeobox92.73.4e-3045108264
           Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                 +++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  Rmu_ssc0000438.1_g000029.1  45 TNNRWAPTPAQLRILQGLYYdKGYKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARERQK 108
                                 579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPRTLQLME LQTQQQLELQ AQQPTEEGGS TQAAGSSANT PIRPTNNRWA PTPAQLRILQ  60
GLYYDKGYKY PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKARERQKLK EFRNVRVGGS  120
LDLNFGSTSS TDDGRSIDLH FGSTGSTGDD GSIDLTLGSC VGYGVDPNSF SPFNANTSTT  180
SFGTTGGQSF MEHRGGDHQE VETLPLFPVH GEDVLGNPKT TSEEGSAYGY YSGGSGSYNS  240
GSQVSLELSL NPFGAADLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-21WOX family protein