PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000454.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 232aa MW: 25504.2 Da PI: 8.5294

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000454.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.5	1.2e-29	53	143	1	90
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPv + + Rmu_ssc0000454.1_g000007.1 53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRNDAVVTISYEAQARLSDPVASLQTELAM 135 7*********************9989*********************************************99999888 PP DUF260 83 lqqqleql 90 +q ql ++ Rmu_ssc0000454.1_g000007.1 136 VQTQLINS 143 88887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MADQPQPQGN HRGTSESRRR KATSAATGKQ QQRTAVDHHL HHHQSSSTAA SAPCGACKFL 60 RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRNDA VVTISYEAQA 120 RLSDPVASLQ TELAMVQTQL INSRFAFANA IQSSQQHQEQ QQNMALLQSA YSNNSSASTN 180 PINMRSFTSN FNHELAAETA PCSHSLEPLL LSRPSQDEEE DEQQSQVPHH FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	8e-57	LBD family protein