PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000471.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 366aa    MW: 40556.6 Da    PI: 9.7026
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000471.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1366114155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Rmu_ssc0000471.1_g000001.1  66 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNGEDEAARAYDVAAQRFRG 114
                                 89****9888.8*********3.....5**********99*************98 PP
2B31016.7e-32198297196
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+
  Rmu_ssc0000471.1_g000001.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGSTCKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDI 280
                                 89***************************97778899********************************************** PP

                                 EEEEE-SSSEE..EEEE CS
                          B3  80 vvFkldgrsefelvvkv 96 
                                 v F+++   +++l++ +
  Rmu_ssc0000471.1_g000001.1 281 VSFQRSTGPDKQLYIDW 297
                                 ****8866777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDITSSTTDE STSSELSMSI SPPPRPNNKL SPSPPQSLCR VGSGASSVIL DSENGIEAES  60
RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNGEDE AARAYDVAAQ RFRGRDAVTN  120
FKPLAESTDN DDDEIEAAFL NSHSKSEIVD MLRKHTYNDE LEQSKRNMGF DANGQRRARG  180
ESGPMGPDRA AKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGS TCKGVLLNFE  240
DVGGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGPD KQLYIDWKAR  300
STGPNPVQSG PVHMVRLFGV NIFKIPGSGS PGVDAPIGCN ALGKRMREIE LLELEFSKKP  360
RIIGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-149RAV family protein