PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000474.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 243aa    MW: 27394.9 Da    PI: 7.8821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000474.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1468119155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  Rmu_ssc0000474.1_g000012.1  68 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKRLSIPATVSRVLKYIPELQ 119
                                 6789**************************...9******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MLALSPPLFS TIGWPLEDHP ISHDHNYFSA ESSLLHFPTT LQPQFDKLDH STPSTAISGE  60
GNSSSMTKKL NHNASERDRR KKINNLYSSL RSLVPADHAK RLSIPATVSR VLKYIPELQQ  120
QVEGLIQKRD ELLSKISKQE NVILQEEKQV KSTARRSRSS LSAVSTTRLS DSEVAIQIST  180
ISSTHNFISR ILQSLEEDGL EILNASSFES SGGRVFYNLH LQVDMFHRLE CEKLSEKLMS  240
FYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-57bHLH family protein