PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000481.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 394aa MW: 43287.6 Da PI: 9.8801

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000481.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.2	1.4e-13	240	284	8	52
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e+LA++lg+ +qV+ WF N R Rmu_ssc0000481.1_g000002.1 240 GEAVTQQLYASFKENQYPDRSMKERLAQELGVMAKQVSKWFENAR 284 567799*************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MFNVVRFGMR STHARFDIYC VVTKSDFNPD APDPTEDVKQ DSSSSDFTSD SEDLAAVLDE 60 DNKSFENGEG PQSSLLEGST LLTGSGEKSS KRGQKRHSIK DEISSLLESD SGQDGSTPVS 120 GKRHVERLDY KKLHDEEYGN IPTSDDEDYN ETAAPRKRKK GTGQVSPASL KGKPSTIKNG 180 VTSKDIKDDP DKNEHTPRRT PRRKSSAKDN SSSPNESLKS SPKSGSTSGR ARASKYRRLG 240 EAVTQQLYAS FKENQYPDRS MKERLAQELG VMAKQVSKWF ENARHCVKAG LAVPQAMRKQ 300 PNQAETNIRD ADHDGAQKNE SPGTDDTVAG CCSQDVKDNK LATPKSSRAK TSTPKGRKRK 360 SRLDPGGSDL DEKFKTPPET SKGGRVTRRR KSVA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MFNVVRFGMR STHARFDIYC VVTKSDFNPD APDPTEDVKQ DSSSSDFTSD SEDLAAVLDE  60
DNKSFENGEG PQSSLLEGST LLTGSGEKSS KRGQKRHSIK DEISSLLESD SGQDGSTPVS  120
GKRHVERLDY KKLHDEEYGN IPTSDDEDYN ETAAPRKRKK GTGQVSPASL KGKPSTIKNG  180
VTSKDIKDDP DKNEHTPRRT PRRKSSAKDN SSSPNESLKS SPKSGSTSGR ARASKYRRLG  240
EAVTQQLYAS FKENQYPDRS MKERLAQELG VMAKQVSKWF ENARHCVKAG LAVPQAMRKQ  300
PNQAETNIRD ADHDGAQKNE SPGTDDTVAG CCSQDVKDNK LATPKSSRAK TSTPKGRKRK  360
SRLDPGGSDL DEKFKTPPET SKGGRVTRRR KSVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	160	RKRKK
2	356	363	GRKRKSRL
3	387	392	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-20	HB-PHD family protein