PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000485.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 315aa MW: 35210.6 Da PI: 7.9338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000485.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0017	252	274	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C+k F + L H r+H Rmu_ssc0000485.1_g000001.1 252 FKCPFCSKIFGSGQALGGHKRSH 274 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MEKHQCKLCA RIFNNGRALG GHMKAHMAVL PLPPKTHQQL AAAESTHSAS SSSSSSEDEQ 60 QKGSHQQEEE DQKALAYVLR ENPKKSFRLA DPEFSFQVDA GSVVIQDRES ETESRNPTRR 120 RSKRNRRMSF TEKLELKKPK LTTSTVDSPP AEPEPLSSVS DTSPEEDVAM CLMLLSRDVW 180 MRTNCGEADQ EQNGKEEFEQ LEEIKLKKVR GKNRCDKCSK LFRSHQAMCV HRKICFRSEA 240 EANNAASSAS LFKCPFCSKI FGSGQALGGH KRSHLSGTAG YSRVVTKVTE VRESFIDLNM 300 PAPQEEDNFS VVSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	RNPTRRRSKRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-37	C2H2 family protein