PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000486.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SRS

Protein Properties

Length: 197aa MW: 22402.2 Da PI: 8.2271

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000486.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	168.8	2.9e-52	4	153	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 +++C+dCGn+akk+C+++RCRtCCk++gf C+thvkstWvp +kr+ +q++ ++ + ++ a + + + +k+ ++ Rmu_ssc0000486.1_g000003.1 4 RSRCEDCGNKAKKECVYMRCRTCCKNKGFRCQTHVKSTWVPLYKRSLLNEQQHPNDDHHRQ-QQLAIDQGHIFINPDKKLRQH 85 569****************************************9876666655444433.334444444434444444444 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 + + s a + + +++P+ev ++a f+ +rvss+dd + ++ aYqt+v igGhvf+GiLydqG++ Rmu_ssc0000486.1_g000003.1 86 KPSSSCAGLDRDHQEANFPAEVTTMAKFQGIRVSSMDDmvDLDQHAYQTSVIIGGHVFRGILYDQGPA 153 44445555556667788*****************766689********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGSRSRCEDC GNKAKKECVY MRCRTCCKNK GFRCQTHVKS TWVPLYKRSL LNEQQHPNDD 60 HHRQQQLAID QGHIFINPDK KLRQHKPSSS CAGLDRDHQE ANFPAEVTTM AKFQGIRVSS 120 MDDMVDLDQH AYQTSVIIGG HVFRGILYDQ GPAVHQMDYY TSASAADQPH PPPSYQLINP 180 FNAFMPAGTQ FFQNLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	5e-44	SRS family protein