PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G00882
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 259aa    MW: 28212.3 Da    PI: 10.4232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G00882genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-143480147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
      Ro01_G00882 34 RVPWTEEEHRTFLMGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 80
                     789*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRKCSHCGN IGHNSRTCTN FRGTSTTGFA GTTRVPWTEE EHRTFLMGLE KLGKGDWRGI  60
SRNYVTTRTP TQVASHAQKY FLRQATLTKK KRRSSLFDMF GSSSNNTQSK PSSIDPAPTQ  120
CFNINPTSPH QHNIQLQLST STTSAAQNLK PSDNQQKPAD YSSTPPPLGN SHHHDRARDH  180
AMPVWIYGLI DSQLKYSNAA SSSKPSTSNI PSSSVVPDHL ELTLAAPVRP INLEQNRSSS  240
SSSSPTGGPL LNIGPISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-39MYB_related family protein