PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G00995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 547aa    MW: 61290.3 Da    PI: 6.4731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G00995genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.26.9e-971785462374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                  +e L+++A++++s++l+laq +L rl+++       + p g+p+qR+a yf+ AL++ l++   ++  +   + +s+++ ++++ a+k fs +sPi+ 
  Ro01_G00995 178 IEELIRAADCFDSDELQLAQVILDRLNQRqrlsspnSKPVGKPLQRAAVYFKDALQSLLNS---STGTTPVRNLSSWSEIVQTIRAYKCFSGISPIPM 272
                  679************************987773333345577******************9...4444445556666779****************** PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                  fsh+t+Nqa+lea++g++ +H+iDfdi+ G+Q+++L+++La+++     +pp +RiT+v+++e   + e + ++e+L++fA+el+++f++++l+++++
  Ro01_G00995 273 FSHFTTNQALLEALNGSNFIHVIDFDIGLGGQYASLMKELAEKAdvsrTNPPVVRITAVVPEE--YAVEGRLVRENLSQFAQELKIRFHIDFLLVRTF 368
                  *******************************************9888888***********66..99999**************************** PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseer 282
                  e l+++++++  gE++a  l+  ++r l    s++++  ++L  +++lsP vvv+v+ e  a+++++sF + f+  le++s +++sl+a +p  +   
  Ro01_G00995 369 EILSFKAIKFMDGEKTALLLSPYIMRRL----SSADNVGAFLGDIRRLSPSVVVFVDGEglAETGTTSFRRNFVCGLEFFSIVLESLDAAVPGGD-MV 461
                  ***************************9....33333568*******************88888**************************97765.56 PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +k+E +ll+++i+ +v ++g++       +  Wre ++ aG++pv+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  Ro01_G00995 462 RKIETFLLRPKIEAAVEAAGRR-------VPPWREVFHGAGMRPVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 546
                  79******************98.......99************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MRVPVTTPQN NNNTNQSPNP KPETNLGFHT PSRICYEPTS VLELRHSPSP VAAEKPAKVS  60
AISDVLSHPN HHEPLEWDEQ ALHNLDWDSI MRDLGLDDSV SNLKTTTTTQ LNHHPNTDPQ  120
IPHLPEYPHP FDPTQLVHSD FTLSEVYSSH NFSHHNLNSY DHNDFHHSGN SNVGFDFIEE  180
LIRAADCFDS DELQLAQVIL DRLNQRQRLS SPNSKPVGKP LQRAAVYFKD ALQSLLNSST  240
GTTPVRNLSS WSEIVQTIRA YKCFSGISPI PMFSHFTTNQ ALLEALNGSN FIHVIDFDIG  300
LGGQYASLMK ELAEKADVSR TNPPVVRITA VVPEEYAVEG RLVRENLSQF AQELKIRFHI  360
DFLLVRTFEI LSFKAIKFMD GEKTALLLSP YIMRRLSSAD NVGAFLGDIR RLSPSVVVFV  420
DGEGLAETGT TSFRRNFVCG LEFFSIVLES LDAAVPGGDM VRKIETFLLR PKIEAAVEAA  480
GRRVPPWREV FHGAGMRPVE LSQFADFQAQ CLLGKVQVRG FHVAKRQAEL VLCWHDRALV  540
ATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-168GRAS family protein