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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Ro01_G00995 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 547aa MW: 61290.3 Da PI: 6.4731 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 316.2 | 6.9e-97 | 178 | 546 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+e L+++A++++s++l+laq +L rl+++ + p g+p+qR+a yf+ AL++ l++ ++ + + +s+++ ++++ a+k fs +sPi+
Ro01_G00995 178 IEELIRAADCFDSDELQLAQVILDRLNQRqrlsspnSKPVGKPLQRAAVYFKDALQSLLNS---STGTTPVRNLSSWSEIVQTIRAYKCFSGISPIPM 272
679************************987773333345577******************9...4444445556666779****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
fsh+t+Nqa+lea++g++ +H+iDfdi+ G+Q+++L+++La+++ +pp +RiT+v+++e + e + ++e+L++fA+el+++f++++l+++++
Ro01_G00995 273 FSHFTTNQALLEALNGSNFIHVIDFDIGLGGQYASLMKELAEKAdvsrTNPPVVRITAVVPEE--YAVEGRLVRENLSQFAQELKIRFHIDFLLVRTF 368
*******************************************9888888***********66..99999**************************** PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseer 282
e l+++++++ gE++a l+ ++r l s++++ ++L +++lsP vvv+v+ e a+++++sF + f+ le++s +++sl+a +p +
Ro01_G00995 369 EILSFKAIKFMDGEKTALLLSPYIMRRL----SSADNVGAFLGDIRRLSPSVVVFVDGEglAETGTTSFRRNFVCGLEFFSIVLESLDAAVPGGD-MV 461
***************************9....33333568*******************88888**************************97765.56 PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+k+E +ll+++i+ +v ++g++ + Wre ++ aG++pv+ls++a qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
Ro01_G00995 462 RKIETFLLRPKIEAAVEAAGRR-------VPPWREVFHGAGMRPVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 546
79******************98.......99************************************************************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 547 aa Download sequence |
MRVPVTTPQN NNNTNQSPNP KPETNLGFHT PSRICYEPTS VLELRHSPSP VAAEKPAKVS 60 AISDVLSHPN HHEPLEWDEQ ALHNLDWDSI MRDLGLDDSV SNLKTTTTTQ LNHHPNTDPQ 120 IPHLPEYPHP FDPTQLVHSD FTLSEVYSSH NFSHHNLNSY DHNDFHHSGN SNVGFDFIEE 180 LIRAADCFDS DELQLAQVIL DRLNQRQRLS SPNSKPVGKP LQRAAVYFKD ALQSLLNSST 240 GTTPVRNLSS WSEIVQTIRA YKCFSGISPI PMFSHFTTNQ ALLEALNGSN FIHVIDFDIG 300 LGGQYASLMK ELAEKADVSR TNPPVVRITA VVPEEYAVEG RLVRENLSQF AQELKIRFHI 360 DFLLVRTFEI LSFKAIKFMD GEKTALLLSP YIMRRLSSAD NVGAFLGDIR RLSPSVVVFV 420 DGEGLAETGT TSFRRNFVCG LEFFSIVLES LDAAVPGGDM VRKIETFLLR PKIEAAVEAA 480 GRRVPPWREV FHGAGMRPVE LSQFADFQAQ CLLGKVQVRG FHVAKRQAEL VLCWHDRALV 540 ATSAWRC |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 1e-168 | GRAS family protein | ||||




