PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01026
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 571aa    MW: 62735.5 Da    PI: 4.7599
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01026genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.43.4e-1081885552373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++Ll+cA+ ++s + e+a + L rl+e as++gdp++R++++fteAL +r++    +  k+l++ +ts   +++ + ++k++++++P+ kf+hltaN
  Ro01_G01026 188 LKALLDCARILES-EPERAIKSLIRLRESASEHGDPTERVTFHFTEALYSRVSL---QPEKSLTAYDTS--CEEDFTLSYKALNDACPYSKFAHLTAN 279
                  689******8887.7788889999****************************98...344445444444..4789999******************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ v + +++l+ + +
  Ro01_G01026 280 QAILEATDRATKIHIVDFGIVQGVQWAALLQALATRSTGKPsRIRISGIPAPSLGnsPAASLYATGNRLSEFAKLLELNFEFEP-VLTPIQELDESCF 376
                  *************************************666659*********99998999************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+p+E laVnl+lqlh+lldes++  +   + L+l ksl+Pk+v++ e ea++n+  Fl rf  a++yy+a+f+sle ++ r+s er  vEr llgr
  Ro01_G01026 377 RVEPDEFLAVNLMLQLHNLLDESTTGVE---AALRLAKSLNPKIVTLGEYEAKLNRVGFLGRFKTAFKYYTAMFESLEPNMTRDSPERLQVERLLLGR 471
                  ********************99999888...9****************************************************************** PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                  +i  +v  e+   +r+r e +e+W+  +e +GF+pv+ls++a++qak ll +++ +  y++ e+   ++ l W++ pL++vS+W
  Ro01_G01026 472 RIAGAVGPEEPGtKRQRLEDKEQWKYLMECSGFEPVTLSHYAVSQAKILLWNYSyNSSYSLIESPPGFLsLAWNEVPLFTVSSW 555
                  *******99887699***************************************9999999888766666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    
GSGFSDPFQL PGSSDSTVGE PGFPFPTLDH HHSSSAGFRF SDLGGGPAEF DSDEWMDSII  60
GGGDSTDSSN LPSVCDAWQS NAADFGIYAS DPFAPCPSRL GAPCSSPSDL NRVIFSEAQN  120
QNQKSPNLLP QLPAWTPPPP PPPQPHSIAV KDAKSANPPA QLPTCRNENN AVGVSSRSPE  180
IESAPPLLKA LLDCARILES EPERAIKSLI RLRESASEHG DPTERVTFHF TEALYSRVSL  240
QPEKSLTAYD TSCEEDFTLS YKALNDACPY SKFAHLTANQ AILEATDRAT KIHIVDFGIV  300
QGVQWAALLQ ALATRSTGKP SRIRISGIPA PSLGNSPAAS LYATGNRLSE FAKLLELNFE  360
FEPVLTPIQE LDESCFRVEP DEFLAVNLML QLHNLLDEST TGVEAALRLA KSLNPKIVTL  420
GEYEAKLNRV GFLGRFKTAF KYYTAMFESL EPNMTRDSPE RLQVERLLLG RRIAGAVGPE  480
EPGTKRQRLE DKEQWKYLME CSGFEPVTLS HYAVSQAKIL LWNYSYNSSY SLIESPPGFL  540
SLAWNEVPLF TVSSWLGDFL GSYKFERLKY D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein