PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01040
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 155aa    MW: 17991.7 Da    PI: 10.2389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01040genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-081457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a + +  +   +W++Ia+ +g g+t++++k  +
      Ro01_G01040 14 TWTAKQNKLFENALAIYDREthdRWRKIAKIVG-GKTEEEVKRQY 57
                     7*****************88*************.********877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MVPTKLSSPD SNSTWTAKQN KLFENALAIY DRETHDRWRK IAKIVGGKTE EEVKRQYEIL  60
EHDINCIESG KIPLPKYRKA GESNISNNDK SVPLKEWWPR RVIHLMDDAK NTAYSLLISF  120
VPKLGSKFTA AEEFKAIKKI SGIRHSTNFL RKWIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-29MYB_related family protein