PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01044
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 255aa    MW: 28118.8 Da    PI: 8.2872
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01044genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20137171135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Ro01_G01044 137 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 171
                  ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MQRCSSTSSQ AHVMGSCSCG LFHTQTNSSF SMLFSMPNNN HHKAYDQYEP SDHHHMYSFA  60
SPSSVDCTLS LGTPSTRLTT EDGNGNDDRR GRHERRSVSN FCWDLLQPKH ATSAPKNGNS  120
NSNRGSAGND SLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRATAAASTS  180
ANGATSSGSH SWINNSQTQK MQCYAPSMNG NEFRFMDDHD MMTSHEPADT AAGIPFLSWR  240
LNVTDRPSLV HDFTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-54GATA family protein