PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01052
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 92aa    MW: 10561.8 Da    PI: 9.0414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01052genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.3e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W ++ar +g g++++++k ++
      Ro01_G01052 15 SWTPKQNKLFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHY 58
                     7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    
MASNSLTSSR SSSSSWTPKQ NKLFEKALAL YDKDTPDRWQ KVARAVGGKS AEEVKRHYEI  60
LIEDVKHIES GRVPFPDYRN VQESEVEKYV KC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-34MYB_related family protein