PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01166
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WOX
Protein Properties Length: 297aa    MW: 32726.8 Da    PI: 6.6716
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01166genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192990257
                 T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+t+t++q+++L+el+++   r psae+++++  +l    +++ ++V++WFqN++a+e++
  Ro01_G01166 29 STRWTPTTDQIRILKELYYNkgVRSPSAEQIQRICLQLkrygKIEGKNVFYWFQNHKARERQ 90
                 58****************97689*************************************97 PP
2Wus_type_Homeobox111.54.5e-362892265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri  +L++yGkie+kNVfyWFQN+kaRerqk+
        Ro01_G01166 28 SSTRWTPTTDQIRILKELYYnKGVRSPSAEQIQRICLQLKRYGKIEGKNVFYWFQNHKARERQKK 92
                       789***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MEPQSQQPTE DGGSNKAAGS ANMLCRQSST RWTPTTDQIR ILKELYYNKG VRSPSAEQIQ  60
RICLQLKRYG KIEGKNVFYW FQNHKARERQ KKRFTSDVHV PMQRSGLVGN SNVANWKPED  120
QYLNMNNKYS NICQGVSSSA SASASSAGVV SFNGQMGNYG VYGSMNMEKS FRDCSISAGG  180
GTSTTGVGIG GSISHNYGSW VGGSVDPYSS SSYTTTSTTF FDNQKQIFME EEEEDHQEIE  240
TLPLFPMHGE DIFGNIKTTS EGGGGDYGYY SSGWGGSSRT SLELSLNSYG YNNPNYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-38WOX family protein