PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01208

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 561aa MW: 64312.3 Da PI: 8.7596

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01208	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	500	547	3	45
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 W+ e ++ lv+a k +++ +W+++a ++ ++t++qck ++ Ro01_G01208 500 VWSVEQEKALVHALKTVPKElaggeRWERVAGAVPGKKTANQCKKKFA 547 7***************99***********88*****9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MGAKGWKLQQ QDHYSLLGLS DLRDAATPEE IRKAYLKSAL KYHPDKLAAV LLAEESEAAR 60 EAKKEKIDTH FKKIQAAYQV LSDPVQRRTY DSRRIYNSSS SGSNTNSTTT TTDEYYDERD 120 EDEDEDDQIP TDCAPGDFFN VFGPVFERNS RWSAKQPVAG LGNERAPMEE VDKFYKFWYS 180 FKSSREFLCD YKYERDWLRK VEYLRIRRLV DNAYRRDPRI LRRKEEEKAE KEKKNMAKQM 240 QEEAAARAAE EERRRREEEE KRAAEAALEQ KKVKERERKL LKKERSRFRT LLVGIRDLDK 300 DDVDRLCVWF DLEKLRKMCE RIEEGKDEGL IDELVKIVRD IKKEEDEKKK SSTQQQTQKE 360 NGTNVNGSVK AEKPLGKEEI ELLRKGMVKF PKGTPRRWEV VSEFIGTGRS VEEVLEAMKT 420 VLLKKPDDSK AFDSFLEKRK PSKSIDSPLS TRIEVEGVSG AMSSSSASAS TSTSSTDQSP 480 PTADPNAANA LSSSSEQEDV WSVEQEKALV HALKTVPKEL AGGERWERVA GAVPGKKTAN 540 QCKKKFALLK EDLRSKKSSA A

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MGAKGWKLQQ QDHYSLLGLS DLRDAATPEE IRKAYLKSAL KYHPDKLAAV LLAEESEAAR  60
EAKKEKIDTH FKKIQAAYQV LSDPVQRRTY DSRRIYNSSS SGSNTNSTTT TTDEYYDERD  120
EDEDEDDQIP TDCAPGDFFN VFGPVFERNS RWSAKQPVAG LGNERAPMEE VDKFYKFWYS  180
FKSSREFLCD YKYERDWLRK VEYLRIRRLV DNAYRRDPRI LRRKEEEKAE KEKKNMAKQM  240
QEEAAARAAE EERRRREEEE KRAAEAALEQ KKVKERERKL LKKERSRFRT LLVGIRDLDK  300
DDVDRLCVWF DLEKLRKMCE RIEEGKDEGL IDELVKIVRD IKKEEDEKKK SSTQQQTQKE  360
NGTNVNGSVK AEKPLGKEEI ELLRKGMVKF PKGTPRRWEV VSEFIGTGRS VEEVLEAMKT  420
VLLKKPDDSK AFDSFLEKRK PSKSIDSPLS TRIEVEGVSG AMSSSSASAS TSTSSTDQSP  480
PTADPNAANA LSSSSEQEDV WSVEQEKALV HALKTVPKEL AGGERWERVA GAVPGKKTAN  540
QCKKKFALLK EDLRSKKSSA A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	257	ERRRRE
2	271	283	KKVKERERKLLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	2e-66	MYB family protein