PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01295
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WOX
Protein Properties Length: 384aa    MW: 44214.3 Da    PI: 8.6776
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01295genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21.1e-21177237257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+lF + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Ro01_G01295 177 RQRWTPTPVQLQILEQLFDQgNGTPSKQKIKEITSELgqhgQISETNVYNWFQNRRARSKR 237
                  89*****************99**************************************97 PP
2Wus_type_Homeobox100.51.3e-32176239265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+l+++G  tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq
        Ro01_G01295 176 ARQRWTPTPVQLQILEQLFDQGNGTPSKQKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQ 239
                        789***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MTPSCYRLKD LIQQKKNGRW GILTPTKFQF LFMSISLWSI YISLPLFVSF FTFWLSLSLK  60
SLLSLIFSLW KHRDSKRKKE RVFVRTMMEW DKPQQQQKEQ EIDGNGNGNG GVMFVKVMTD  120
EQLETLRKQI AVYATICEQL VEMHKNLTAQ QDLAGVRMGN LYCDPLMTSV GHKITARQRW  180
TPTPVQLQIL EQLFDQGNGT PSKQKIKEIT SELGQHGQIS ETNVYNWFQN RRARSKRKQQ  240
NATSNNAESE VETEVDSPKD KKKGLQDQLL HSQQNSSAQR AEDLCFQNPE MSSDLHFLDP  300
QAIKEDKMFA SSSDLRPSRS LSHMSFYDEV LSSSRGNELM TGKMEVGGSY NLFQQAEDYS  360
IHAMPNLSRV MVPSEFKLEK CGDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17181KHRDSKRKKER
2231239RRARSKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-89WOX family protein