PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G02901
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 196aa    MW: 22510.2 Da    PI: 4.9728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G02901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.4e-39121111100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  aCa+Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn+lk+++ +++++r++a++++++e++ar +dPv+G++gvi++l  q++ ++++l++++
  Ro01_G02901  12 ACASCKHQRKKCDPNCELAPYFPASKYQEFQNAHKLFGVSNILKIMAMIEPHQRQAAAETILMEGNARKSDPVHGCFGVIKDLMVQISFHEKQLSVAN 109
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  ++
  Ro01_G02901 110 QH 111
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MDSESSSPAN QACASCKHQR KKCDPNCELA PYFPASKYQE FQNAHKLFGV SNILKIMAMI  60
EPHQRQAAAE TILMEGNARK SDPVHGCFGV IKDLMVQISF HEKQLSVANQ HLAIHKEQQK  120
KKQEQDQSDY LNVFPDLPNE LMEDLKFFEH EYNYWSTLEG ADNEKPFDME LMEAFDEHGN  180
PLTCFNGQAG ESRYEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-36LBD family protein