PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02975

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 308aa MW: 35222.3 Da PI: 4.7435

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02975	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+t Ed++l d+++ +G g+W+ ++ g+ R++k+c++rw++yl Ro01_G02975 14 RGSWSTMEDQILTDYIRTHGEGRWRELVQEAGLSRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	57.6	2.9e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+el+++++k+lG++ W++Ia +++ gRt++++k++w+ky+ Ro01_G02975 67 RGNISAEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNKYM 112 7899****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MGRKPCCEKE GVNRGSWSTM EDQILTDYIR THGEGRWREL VQEAGLSRCG KSCRLRWLNY 60 LKPDIKRGNI SAEEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNK YMSKRSCSSE 120 QNDNKEGSNE RESAMKSKVR VSLEFKKQVE VIRTKAVKCT KVAIPSHLLD HDLQTVDYCR 180 NNTNNVVVNP AGSEFCTEIP CSSAAQEQNS CGFLMDFNIN DLLISDVMLE STTALQQPQV 240 NECHEDQMVY DGGNDLEDFL MDKAWSEIWT ASTHDCPIQP NDIDDEDVDL DALSSFLNSA 300 DYDHLDHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-59	MYB family protein